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      研究組長

      姓  名: 黃銘坤 研 究 組: 生物信息學(xué)及功能基因發(fā)掘
      職  務(wù): 研究組長 職  稱: 副研究員
      通訊地址: 江西省南昌市溪霞鎮(zhèn)溪霞農(nóng)業(yè)園科研中心
      郵政編碼: 330114 電子郵箱: huangmk@lsbg.cn
      姓  名: 黃銘坤
      研 究 組: 生物信息學(xué)及功能基因發(fā)掘
      職  務(wù): 研究組長
      職  稱: 副研究員
      通訊地址: 江西省南昌市溪霞鎮(zhèn)溪霞農(nóng)業(yè)園科研中心
      郵政編碼: 330114
      電子郵箱: huangmk@lsbg.cn

      學(xué)習(xí)經(jīng)歷:

      2012年9月-2016年1月  中國科學(xué)院華南植物園 博士

      2009年9月-2012年6月 華南農(nóng)業(yè)大學(xué) 碩士

      2005年9月-2009年6月 華南農(nóng)業(yè)大學(xué) 學(xué)士 

       

      工作經(jīng)歷:

      2022年1月-至今 江西省、中國科學(xué)院廬山植物園

      2018年3月-2021年12月 香港中文大學(xué)

      2016年3月-2018年2月 北京中藥研究所/北京諾禾致源生物科技公司

       

      獲獎(jiǎng)及榮譽(yù):

      國家博士獎(jiǎng)學(xué)金

      中國科學(xué)院優(yōu)秀博士論文

       

      研究領(lǐng)域:

      1. 植物功能基因組學(xué)、生物信息學(xué) (Dry lab);

      2. 植物分子生物學(xué)、植物基因編輯 (Wet lab);

       

      承擔(dān)科研項(xiàng)目情況:

      1. 國家自然基金地區(qū)面上項(xiàng)目 (主持)

      2. 江西省緊缺型人才計(jì)劃項(xiàng)目 (主持)

      3. 廬山植物園專項(xiàng)基金 (主持)

      4. 香港中文大學(xué)優(yōu)秀博士后基金項(xiàng)目 (Impact Postdoctoral Fellowship Scheme of The Chinese University of Hong Kong) (主持)

      5. 香港AoE 項(xiàng)目 (Hong Kong Research Grants Council Area of Excellence Scheme, AoE/M-403/16) (參與)

      6.  香港羅桂祥基金項(xiàng)目 (Lo Kwee-Seong Biomedical Research Fund) (參與)

      7.  中國博士后創(chuàng)新計(jì)劃 (BX201600155) 基金項(xiàng)目 (主持)

       

      論文及論著:

      1. Zhang L, Yung WS, Huang M# (2022) STARR-seq for high-throughput identification of plant enhancers. Trends Plant Sci 27(12):1296-1297

      2. Zhang L, Yung WS, Sun W, Li MW, Huang M# (2022) Genome-wide characterization of Nuclear Factor Y transcription factors in Fagopyrum tataricum. Physiol Plant: e13668

      3. Zhang L, Yung WS, Wang Z, Li MW, Huang M# (2022) Optimization of an Efficient Protoplast Transformation System for Transient Expression Analysis Using Leaves of Torenia fournieri. Plants (Basel) 11(16)

      4. Huang M, Zhang L, Zhou L, Yung WS, Wang Z, Xiao Z, Wang Q, Wang X, Li MW, Lam HM# (2022) Identification of the accessible chromatin regions in six tissues in the soybean. Genomics 114(3): 110364

      5. Huang M, Li MW, Lam HM# (2021) How noncoding open chromatin regions shape soybean domestication. Trends Plant Sci 26(9):876-878.

      6. Huang M, Zhang L, Zhou L, Wang M, Yung W-S, Wang Z, Duan S, Xiao Z, Wang Q, Wang X, Li M-W, Lam H-M# (2021) An expedient survey and characterization of the soybean JAGGED 1 (GmJAG1) transcription factor binding preference in the soybean genome by modified ChIPmentation on soybean protoplasts. Genomics 113(1): 344-355

      7. Huang M, Zhang L, Zhou LM, Yung WS, Li MW, Lam HM# (2021) Genomic Features of Open Chromatin Regions (OCRs) in Wild Soybean and Their Effects on Gene Expressions. Genes 12(5)

      8. Zhang L, Zhou L, Yung WS, Su W, Huang M# (2021) Ectopic expression of Torenia fournieri TCP8 and TCP13 alters the leaf and petal phenotypes in Arabidopsis thaliana. Physiol Plant

      9. Huang M, Hu Y, Liu X, Li Y, Hou X# (2015) Arabidopsis LEAFY COTYLEDON1 controls cell fate determination during post-embryonic development. Front Plant Sci 6: 955

      10. Huang M, Hu Y, Liu X, Li Y, Hou X# (2015) Arabidopsis LEAFY COTYLEDON1 Mediates Postembryonic Development via Interacting with PHYTOCHROME-INTERACTING FACTOR4. Plant Cell 27(11): 3099-3111

      11. Huang M, Ma C, Yu R, Mu L, Hou J, Yu Y, Fan Y# (2015) Concurrent changes in methyl jasmonate emission and the expression of its biosynthesis-related genes in Cymbidium ensifolium flowers. Physiol Plant 153(4): 503-512

      12. Wang G, Li X, Shen W, Li M-W, Huang M, Zhang J, Li H# (2022) The chromatin accessibility landscape of pistils and anthers in rice. Plant Physiol

      13. Wang Z, Huang C, Niu Y, Yung W-S, Xiao Z, Wong F-L, Huang M, Wang X, Man C-K, Sze C-C, Liu A, Wang Q, Chen Y, Liu S, Wu C, Liu L, Hou W, Han T, Li M-W, Lam H-M# (2022) QTL analyses of soybean root system architecture revealed genetic relationships with shoot-related traits. Theoretical and Applied Genetics 135(12): 4507-4522

      14. Xiao Z, Wang Q, Li M-W, Huang M, Wang Z, Xie M, Varshney RK, Nguyen HT, Chan T-F, Lam H-M# (2022) Wildsoydb DataHub: a platform for accessing soybean multiomic datasets across multiple reference genomes. Plant Physiol

      15. Yung WS, Wang Q, Huang M, Wong FL, Liu A, Ng MS, Li KP, Sze CC, Li MW, Lam HM# (2021) Priming-induced alterations in histone modifications modulate transcriptional responses in soybean under salt stress. Plant J

      16. Wang G, Li X, Ye N, Huang M, Feng L, Li H, Zhang J# (2021) OsTPP1 regulates seed germination through the crosstalk with abscisic acid in rice. New Phytol

      17. Sun W, Leng L, Yin Q, Xu M, Huang M, Xu Z, Zhang Y, Yao H, Wang C, Xiong C, Chen S, Jiang C, Xie N, Zheng X, Wang Y, Song C, Peters RJ, Chen S# (2019) The genome of the medicinal plant Andrographis paniculata provides insight into the biosynthesis of the bioactive diterpenoid neoandrographolide. Plant J 97(5): 841-857

      18. Hu Y, Zhou L, Huang M, He X, Yang Y, Liu X, Li Y, Hou X# (2018) Gibberellins play an essential role in late embryogenesis of Arabidopsis. Nature Plants 4(5): 289-298

      19. Liu X, Hu P, Huang M, Tang Y, Li Y, Li L, Hou X# (2016) The NF-YC–RGL2 module integrates GA and ABA signalling to regulate seed germination in Arabidopsis. Nature Communications 7(1): 12768

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